Nine other senior county officials also had their houses raided.
An exposé released on Monday detailed that the government had secretly wired Ksh6.5 billion into the accounts.
The former Deputy President made several claims in a letter addressed to IG Kanja.
The suspects were arrested moments before they embarked on their mission.
Trump had imposed a 10% tariff on all Kenyan exports, but later reversed this decision, offering a lifeline for Kenya.
The media house alleged the license revocation plans by the government during its 9 pm new bulletin.
Popular commuter bus company Super Metro has temporarily suspended its services for three days to allow ample time for full compliance with the law. The company
Health Cabinet Secretary Aden Duale endorsed the crackdown.
The CS has said that the ministry will collaborate with security agencies in the crackdown.
The CS nominee made the controversial remarks during the vetting before the National Assembly.