The clarification comes at a time when Murkomen announced that the government will recruit thousands of police officers.
The concern comes a day after the Ministry of Defence revealed what caused the chopper crash that killed former CDF Ogolla.
Ruto also addressed his decision to work alongside Raila Odinga.
The CS made the revelation during the burial service of George Oduor, a long-time aide to former Prime Minister Raila Odinga.
Farouk serves as Ruto's personal assistant, who many leaders including the former DP Rigathi Gachagua complained of.
The Member of County Assembly died after a short illness.
The protests emerged ahead of President Ruto's tour of the region.
The President has given the Cabinet Secretaries expanded roles in their various capacities.
Atwoli has served Kenya for over 20 years.
The invention comes at a time when the country has been facing heightened cases of forced disappearances.